StochPy’s Userguide

• Introduction
• Start using StochPy
• Stochastic Modelling
  • Modelling input
  • Stochastic Simulation Algorithms
  • Nucleosome Modification Simulations
• Installation and Configuration
  • Installation
  • Configuration
• The PySCeS Model Description Language
  • Defining a PySCeS model
  • Advanced model construction
  • Example StoMPy input files
• StochPy Module documentation
  • Stochastic Simulation Module
  • Direct Method
  • First Reaction Method
  • Next Reaction Method
  • Optimized Tau-Leaping
  • Analysis
  • Indexed Priority Queue (IPQ)
  • DNORM
  • PySCeS MDL Parser
  • PyscesInterfaces
  • Stochastic Nucleosome Modification Simulations
  • N-nucleosome model builder

Indices and tables

• Index
• Search Page